- 1 -

1. Empty Brain Norm Creation

- 2 -

2. Control Samples Addition

- 3 -

3. Normalization Definition and Sample Normalization

3D Rendering of Brain VOIs

- 4 -

4. Calculation of Normal Pattern

- 5 -

5. Variance Definition for z-Score Calculation

- 6 -

6. Comparison Settings

- 7 -

7. Result Mask Specification

- 8 -

8. Brain Norm Saving

- A -

AAL Single-Subject Atlas

AAL-Merged Atlas

AAL-VOIs Atlas

Amyloid Cortical Composite

Anatomical PET Image Loading and PET-PET Matching

Application Notes

Atlas Methodology

Atlas Selection

- B -

Batch Mode

Batch Mode Compare to Norm

Batch Mode Maximum Probability Atlas & Brain Parcellation (Brain VOIs)

Brain Norm Creation

Brain Norm Editor

Brain Norm Functionality

Brain Parcellation

Brain Parcellation Implementation in PNEURO

Brain Segments Calculation

Brain Spill-out (Muller-Gartner)

Brain Structures

Brain VOI Editing and Statistics Calculation

Brain VOI Tools: Common Features

Brain VOIs Based on Maximum Probability Atlas

Brain VOIs Based on T1-MRI Segmentation

- C -

Compare to Norm Patient Data Analysis

Cynomolgus Monkey Atlas

- D -

Data Inspector

Domestic Pig / Minipig Brain Atlas (CH.Malbert)

- E -

Example Database

- F -

Filter

Functional PET Image Loading and Time Averaging

- G -

Grey Matter Spill-out and White Matter Spill-in (Muller-Gartner)

- I -

Image Association

Interpolation

- L -

Landmark Definition and MR Segmentation

Landmark Definition and Parcellation

LMA Variant of GTM Method

- M -

Mapping of Pixels from Scatter Plots

Maximum Probability Atlas Implementation in PNEURO

Methodology

MR Image Loading and Denoising

MR Image Loading and Segmentation

MR Loading Configuration

MR-based Normalization

- N -

N30R83 Brain Structures

N30R83 Maximum Probability Atlas

- O -

Outlining of Brain Structures

- P -

Parametric Mapping

Parcellation Result and Matching with PET

Parcellation Result and Outlining of Brain Structures

Partial-Volume Correction (PVC)

Peak VOI and Iso-contouring VOI

PET Image Loading

PET Image Loading and Time Averaging

PET to MR Matching

PET-based Normalization

PMOD Copyright Notice

PMOD Database Functionality

PMOD Neuro Tool Introduction (PNEURO)

PMOD ToolBox

Protocols

- Q -

Quality Control Capture

Quality Control of Normalization

- R -

Recommendations for Brain VOI Calculations

Reduce Matrix

References

Region-based Voxel-wise (RBV)

Replace Values

Run All

- S -

Saving Intermediate Results

Scale Values

Sharing Databases

Statistics of Dynamic PET Data

Statistics of Static Data

Statistics Results

Structure of VOI Atlases in PMOD

- T -

Template-based Normalization

Tree Organization of Atlas VOIs

- U -

User Interface

- V -

VOI Analysis

VOI Based Partial-Volume Correction (GTM Method)

- W -

Workflow for Functional and Anatomical PET

Workflow for MR-only Studies

Workflow for PET-only Studies

Workflow for Studies with PET and MR

Workflow for Studies with PET and MRI

- Z -

z-score

Z-Score Analysis