﻿ Volume-of-Interest (VOI) Analysis > Applying VOI Definitions > Statistics of VOI Pixel Values > Statistics Measures

# Statistics Measures

Statistics Calculation

The descriptive statistics are calculated using the values of all pixels classified for a VOI. With Binary classifications each included pixel contributes equally. Pixels with NaN value are excluded from statistics. Correspondingly, they don't contribute to Volume or NumberOfPixels.

With Fraction mode classification, however the contribution of a pixel is proportional to the fractional area fi included in the contour (fi=1 fully included, fi=0.5 50% included). This weighting applies for the Average, the Standard Deviation, the Volume, the Total and the AUC. For the other measures, which don't support fractional contributions, only the pixels with fi>0.5 are used.

The statistics calculation using a probabilistic atlas is similar to the fraction mode. The contribution of a pixel is proportional to its probability pi for belonging to the VOI (pi=1 certainly included, pi=0.5 included with 50% probability). For measures, which don't support fractional contributions, only the pixels with probability above a user-defined threshold (pi>pt) are used.

Notes:
1. Due to calculation of the fractional area, statistics using the Fraction mode is substantially more time-consuming.
2. The fraction mode is not effective for automatically generated VOIs (iso-contouring, atlases), because the contours follow the pixel boundaries.

Statistics Measures

The statistics measures of interests can be configured with the configuration button as illustrated below:

The selection is serialized. Please note that at least one statistic measure is required to be configured. Following measures can be configured:

 Averaged Average of the pixel values. Fraction mode: Sum(fi*vi)/Sum(fi). vi value of pixel i. Probabilistic atlas: Sum(fi*pi)/Sum(pi). pi probability of pixel i for belonging to VOIi. Sd Population standard deviation of the pixel values. Fraction mode: a weighted standard deviation is calculated accounting for the pixel area included in the contour. Probabilistic atlas: a weighted standard deviation is calculated accounting for the probability of pixel i for belonging to VOIi. Volume or MTV Volume of the VOI pixels. It is based on the pixel size in x and y and the slice thickness in z. Fraction mode: Sum(fi)*pixel-volume. Probabilistic atlas: NumberOfPixels*pixel-volume. In the context of oncology, the volume is called MTV (Metabolic Tumor Volume). Total(SUM) Sum of the pixel values. The interpretation depends on the image contents. In the case of activity units the result will be total activity in the VOI. Fraction mode: Sum(fi*vi), Probabilistic atlas: Sum(pi*vi). Total(AVR*VOL) or TLG Average of the pixel values multiplied by the VOI volume. The interpretation depends on the image contents. In the case of activity concentration units, the result represents total activity in the VOI. Fraction mode: Sum(fi*vi)*pixel-volume, Probabilistic atlas: Average*Volume. In the case of SUV units, the result is called Total Lesion Glycolysis (TLG). The TLG is usually calculated in combination with a lower range. Min Minimum pixel value. Fraction mode: Considers pixels with fi>0.5. Probabilistic atlas: Considers pixels with pi>pt. Max Maximum pixel value. Fraction mode: Considers pixels with fi>0.5. Probabilistic atlas: Considers pixels with fi>pt. NumberOfPixels Number of pixels included in the VOI. Fraction mode: Considers pixels with fi>0.5, Probabilistic atlas: Considers pixels with pi>pt. NumberOfEffectivePixels Fraction mode: Sum(fi). Probabilistic atlas: Sum(pi). Otherwise equal to NumberOfPixels. HotAveraged The highest pixel values averaged. The default Number of Hottest Pixels values to be averaged can be set in the User configuration, and can be changed in the upper part of the statistics window. Fraction mode: Considers pixels with fi>0.5. Probabilistic atlas: Considers pixels with pi>pt. Stdv Sample standard deviation of the pixel values. Fraction mode, Probabilistic atlas: analogous to Sd. Q1 First quartile of the VOI pixel values. Fraction mode: Considers pixels with fi>0.5. Probabilistic atlas: Considers pixels with pi>pt. Median Median value of the VOI pixel values. Fraction mode: Considers pixels with fi>0.5. Probabilistic atlas: Considers pixels with pi>pt. Q3 Third quartile of the VOI pixel values. Fraction mode: Considers pixels with fi>0.5. Probabilistic atlas: Considers pixels with pi>pt. AreaUnderCurve Static data: Averaged times frame duration. Fraction mode: Sum(fi*vi*t)/Sum(fi) (t = acquisition duration). Probabilistic atlas: Sum(pi*vi*t)/Sum(pi). Dynamic data: Integral of the Averaged curve. HypoxiaIndex Fraction of pixels in the VOI which have a value above the threshold in the Hypoxia Threshold field. Fraction mode: Considers pixels with fi>0.5. Probabilistic atlas: Considers pixels with pi>pt. HypoxicVolume Represents the number of voxels inside a VOIs with value greater than the hypoxia threshold  multiplied by the volume of the pixel size. Fraction and the Binary mode - consider only the voxels with fi > 0.5 . NumberOfNaNs Represents the number of voxel with NaN value inside the VOI VolumeWithoutNaNs Volume of the VOI pixels which value is different from NaN. It is based on the pixel size in x and y and the slice thickness in z. Fraction mode: Sum(fi)*pixel-volume.